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What really happened to the Engineers in Prometheus, something everyone missed!

What really happened to the Engineers in Prometheus, something everyone missed!

With Ridley Scott returning to the expansion of his Alien universe this year with the theatrical release of the Prometheus sequel Alien: Covenant, many fans have begun re-analyzing parts of Prometheus. One such scene which to this day puzzles many is the Hologram recording scene which involved a group of Engineers running away from something off-camera. At first everyone assumed it was a Black Goo infection, but that really doesn't make much sense when you break down the scenes leading up to and following that particular series of events.

After re-watching Prometheus for what feels like the hundredth time, I noticed a few new details which I and most of the fandom had overlooked prior to today. This post will detail these points and explain how and why we may have purposely been led astray upon our initial viewing of the Alien prequel.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Entering the Engineer Temple - Overlooked Detail

The Engineers on LV-223 were all dead except for one in the temple / Pyramid the Prometheus crew investigated. That one survivor was left in a cryo-chamber asleep. The Hologram recording insinuates all the other Engineers were dead and that none escaped.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

The entrance to that temple required the Prometheus crew to physically crouch down and wiggle their way through a broken door. Screenshots below clearly show a curved door frame and what seem to be layers of a stone/metallic door, of which the final panel was busted in.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Image for What really happened to the Engineers in Prometheus, something everyone missed!

There is no way and Engineer would fit through that small portion of open door. The only way an Engineer would fit is if he were to crawl in or out. Thus, the door to the Temple was clearly shut or in the process of closing when something busted in or out of it.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

This shot above shows clear cuts and straight metallic borders on each panel, indicating that this was not simply a "hole in the Pyramid". 

The following screenshot is of the on-board camera feed from back on the USCSS Prometheus, where Janek and the rest of the crew observed the initial descent into the Engineer Pyramid structure. The top right feed gives us another look at the clearly broken door.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Again, there is absolutely no way this door was merely left open - Engineers would have no way in or out if so. This suggests the Temple may have fallen prey to an attack, rather than an outbreak...

The passageway into the Pyramid in ruins

As the Prometheus crew make their way into the Pyramid, they follow the only logical path laid before them. This path also seems to be filled with debris, as if the structure had been partially destroyed in some sense. The following screenshots will help illustrate these points:

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Image for What really happened to the Engineers in Prometheus, something everyone missed!

As you can see, specifically in the screenshot directly above this paragraph, the rock debris is littered in a way that would suggest something broke its way into the Pyramid rather than broke out.

As the crew continue to follow the obvious pathway into the structure, they find themselves in a circular room, where (to the displeasure of many fans) the crew remove their helmets after discovering the Pyramid was generating an atmosphere. But let's ignore the helmet removal, the big clue here is the way they entered the room. Again, notice the Engineer markings on yet another circular door, which is yet again broken, not left open. Noticing a trend yet?

Image for What really happened to the Engineers in Prometheus, something everyone missed!

In the above frame, the debris is actually somewhat of an obstacle as it lays directly in front of them as they make their way into the room. Again, the big slabs of rock, which seem to have rolled inwards indicate the door was busted in, not out.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

This second angle shows more of the debris. Notice, nowhere else in the room is there debris like this. So, this also confirms that the Engineers do not decorate their installations with rocks - much the disappointment of Fifield, I imagine.

Keep in mind also, whether scientific or military, an advanced race of super-Humans would surely maintain a certain level of cleanliness and organization for such an important and secret installation.

The Green Goo on the Hologram control panel

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Something many fans seem to ignore is the very specific moment when David discovers green goo on the Hologram control panel. This is not Black Goo and it looks very reminiscent of Xenomorph saliva, however it's not. Upon closer analyzing the goo, David remarks "impressive..." and when zoomed in, it looks like the Goo consists of intricate cells which are seemingly still active, even after 2,000 years (assuming carbon dating is accurate to use on an Alien organism).

Why is the Goo on the controls? The Engineers do not emit Goo through their hands, nor do their suits excrete such a substance. If it were from an unknown Alien creature, like a Xenomorph, why would it have its head pressed against a wall for its saliva to smear across it? Seems odd, doesn't it? What if this was blood... blood of an Alien creature we have not yet seen?

Clue Summary 1: There was NO outbreak, the Pyramid was attacked!

The above evidence would suggest that contrary to what we were lead to believe through dialogue by the Human crew members, the Engineer Pyramid on LV-223 was NOT victim to an outbreak of hazardous material. These are an ancient race of highly skilled and intelligent beings - the likelihood of one of them not handling their bio-former material with care is extremely unlikely. Also - their pressure suits mimic those of bio-hazard / hazmat suits we as Humans use today to shield ourselves from harmful chemicals. Thus, it's not a stretch to assume that the Engineer Pressure Suits would have acted as protection against the Black Goo - and all the Engineers in the hologram had these suits on.

Given the analysis above, it leaves us with a few probabilities. Either the Pyramid and the Engineer installations on LV-223 were the target of an organized attack by some unknown entity, or an Alien creature got loose on the planet, found its way to the Pyramid, broke its way in and made short work of the Engineers stationed there.

Side Note: Location, Location, Location!

LV-223 and LV-426 (setting for ALIEN and ALIENS) are part of the same system. The Space Jockey ship which crashed on LV-426 was very, very old and carried a cargo full of Xenomorph Eggs. Is it possible, that the Space Jockey represented a different race of Engineer, one that was opposed to the group on LV-223, or possibly even a radical from their own group, who attempted to stop the assault on Earth. There could have been an Engineer civil war due to the one faction's extremist view and will to end Humanity, which led the rebellious ones to unleash the Xenomorph - but at a cost. Perhaps Aliens were dropped onto the LV-223 installation to eradicate the Engineers before they launched their assault on Earth, but in the process, the cargo was unstable and got loose somehow - killing the radical Space Jockey in the process and crashing on LV-426 shortly after its "drive-by" of LV-223. Certainly a possible scenario.

Blatant audio clues to support an Alien attack

Another aspect of Prometheus many seemed to neglect when scrutinizing and analyzing its plot were the audio clues littered throughout.

At approximately 34:22 the crew of the Prometheus venture down a hallway, to which Milburn remarks that the water might be "martian piss", a faint screech can be heard. The screech mimics that of a Xenomorph all too well, when compared to the sound effects even used in Alien videogames. Look up that scene, turn the volume way up and listen to the faint screech and then play 2010's Aliens vs. Predator game as an Alien and click the "roar" button. Almost identical. Coincidence?

Roughly a minute later David activates the Hologram and a very familiar audio clip is played as the Hologram starts up. Echoing down the halls of the Pyramid is the call of the Deacon. If you wish to check it yourself, the roar kicks in at approximately 35:15, right before the Engineers begin running down the all.

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Image for What really happened to the Engineers in Prometheus, something everyone missed!

Between the two audio clips, the Deacon roar is by far the more concrete one to use as an argument for this analysis. The roar only happens when David activates the Holographic recording, of which the Pyramid replays both audio and visual data. The Engineers are frantically running away from something, that much is clear. It can't be the Black Goo, because the Black Goo does not disperse like a gas bomb and as stated earlier, their suits would have shielded them from its contents anyways. Compare the audio played at 35:15 with the roar at the end of Prometheus and the two match up identically.

In Conclusion

It is clear that many of us were confused by a series of red herrings littered throughout Prometheus. Fans were quick to judge screenwriter Damon Lindelof for his "poor writing" and pacing of the story, but in actuality Lindelof did exactly what he was tasked to do - ask questions, leave hidden clues and set up for a sequel. It is extremely unlikely that all of the above acknowledgements were simple mistakes (especially the audio), I didn't need to read into the film too much to realize the obvious - all it took was another viewing where by I paid attention to the background instead of the obvious focal points.

To summarize everything discussed, it is clear that the fate of the Engineers on LV-223 were not what Shaw and Janek assumed it to be. They were observers with limited understanding of what the installation was - as Humans often do, they jumped to conclusions and assumed an outcome based on their very limited understanding. In actuality, there is a much larger backstory at play here, one that seemingly insinuates an internal conflict within the Engineer society.

What we can't deny: The Pyramid was ravaged and broken into by something. From there, something let out a terrible roar before chasing down and murdering all but one of the Engineers in that facility. Something left a residue on the Hologram control panel and something piled up those bodies against that door Fifield and Milburn discovered.

Speculative Outcome:

Given the above and the fact that an Engineer was left alive on LV-223, I am willing to bet that (like in Jon Spaihts' original Alien: Engineers script) there was an Engineer vs. Alien conflict following the initial attack. The Engineer, who David wakes up in Prometheus was the only one to survive the ordeal and who likely killed the Alien (or Deacon)- or at least trapped it in the room, behind the pile of dead Engineer bodies. Why he didn't flee in the Juggernaut ship is unknown, but could be due to the fact that he was infected by the Alien prior to his victory - leaving a festering spore inside of him. The spore was then accelerated and mutated when impregnated by the Trilobite at the end of the film. By entering into Cryo-sleep (as David suggests to Shaw earlier on after discovering her "abnormal fetus") he would have slowed its growth and extended his life until more of his comrades showed up to assist him. Obviously, they never did and when he was awoken 2,000 years later he realized his people may very well have been wiped out - thus sparking his rage and immediate action to launch his assault on Earth.

Of course that last bit was my own personal opinion based on the facts presented, but it certainly makes more sense than the "outbreak" scenario we were suggested in the film.

What do you think? Do the above points change your outlook on this very important scene in Prometheus? If accurate, how do you think this Engineer Civil war may be explored in Alien: Covenant? Let me know your thoughts in the comments section below and feel free to suggest anything I may have missed.

The Alien: Romulus sequel is currently in development and cameras are set to roll by October, 2025! Be sure to bookmark the Alien: Romulus 2 Info Page for an up-to-date account of all available information, production updates and important details!

In addition to the upcoming Alien: Romulus sequel, we have the Alien: Earth TV series from Noah Hawley now streaming and a rumoured Alien vs. Predator reboot in the works as well!

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Brendalien
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Well I believed that there was a civil war of sorts with the engineers or perhaps a war with another intelligent species. During the attack on the station the black goo was accidently released causing a xenomorph outbreak where only one engineer survived.

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S.M
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"What we can't deny: The Pyramid was ravaged and broken into by something."

We can deny that.  It's speculation like the rest of your piece, which is otherwise pretty interesting.

 

(Except that I'll still accuse Lindelof of poor writing.)

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Chris
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The Pyramid doors being broken and debris littering the crew's path is really, the only concrete (pardon the pun) evidence we can't deny, though. lol

And thank you!

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Hive Grown
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If I remember correctly either Ridley or Lindelof said that the answer to a lot of the questions in Prometheus are answered in the film, just not in an obvious way. 

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S.M
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"The Pyramid doors being broken and debris littering the crew's path is really, the only concrete (pardon the pun) evidence we can't deny, though."

I had a look at the scene you're talking about and really can't see anything that makes me go "that's definitely wreckage from the door."  There's a lot of debris on the slope leading from the surface down to the door as well (ie. on the outside, rather than the inside).

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MuzzleNZ
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Thanks Chris - this is a really interesting and considered article. I have to agree with most of what you've said, and think (regardless of the detail) that the overarching concept of what you've raised is correct.

One thing that does add a little complexity to your theory is what happened to the 're-animated' Engineer head in Prometheus. While the inference is that the head 'broke down' like the Engineer at the start of the film (due to exposure/ingestion of black goo), it may well have been the rapid decomposition of the head brought on by the electrode stimulation. Once again, perhaps the inference (and subsequent assumption by viewers) was a distraction - the head didn't explode due to black goo after all.

I think another interesting point is that viewers are led to believe that all the Engineers were running in to the room with the canisters, and that the last one, who clearly collapses (perhaps due to bodily injuries that are unseen due to no investigation of the body itself, just the head) is decapitated as the door shuts. If there was an outbreak of goo, why would they run in to a room with more goo? And, where did they go from there, given (again) the inference is that the door they entered through isn't reopened (as the head is preserved inside) for them to exit that way. How did they get out, and was it in fact those Engineers that were subsequently piled up in another location with their chests bursted outwards (as Fifield and Milburn note), or did those Engineers survive, and the ones F & M find are a different group. It could be that the hologram is actually showing the 'rogue' Engineers that attacked the installation (not the pile of subsequent dead ones), and that they were running back to their ship and escaped? This would of course also support the warring Engineer theory.

Hard to know - is it clever writing, leaving subtle crumbs for the discerning viewer to re-watch and discover, or is it sloppy? It could be a mixture of both, but we know from Lost that there were numerous 'interesting' parts that turned out to go nowhere and in some cases, be contradicted further down the track.

Great article though. Keep them coming!

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Deep Space
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Interesting!  The entrance to the facility always struck me as too fortunate - I always assumed it was a broken vent or something but never paid any more attention to it.  Could well be what you say ...

I was thinking of there was an attack here then going off what we have seen from pics of dead engineers on Paradise, maybe there was a whole galactic (or bigger!) attack on the engineers?

Something has befell the race, that much is clear, and the black goo and xenos seem to be heavily involved.

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brego
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Very well put together Chris.

I have always suspected that after either a Black Goo Accident or Act of Sabotage a Deacon or Xeno did emerge. Perhaps the remaining Engineers managed to get it outside from where as you say it broke back in or perhaps it all happened in another Pyramid/Silo and all remaining Engineers put up their last stand within the one we saw in Prometheus.

I have always suspected that all but two Engineers met the death some 2000 years earlier on LV223. One managed to make it to a stasis pod (as we saw in Prometheus), but one managed to make it to another ship, launched and made his or hers way into space but realized too late that he was carrying a passenger. The passenger birthed causing him to ditch on LV426 becoming the Derelict and Space Jockey whom we all know and love.

My hopes and suspicion that the Derelict crash landed on top of (and partially caused the collapse ) a pyramid on LV426 which was populated by a team of Engineers, killed off by the matured Deacon/Xeno, which became a Queen and laid the Eggs which Cain found have been argued previously elsewhere.

 

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Centauri
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Nice observation and study @Chris!

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Nige
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Something bad ass enough to kick the doors in, something fastidious enough to remove all the Engineer remains, something strange and hardy enough to leave green "goo" with cells still viable after 2000 years, something confident enough not to worry about a rampaging Deacon on the loose...sounds a bit like a Predator to me.

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Ati
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---

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Xenowarrior1
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Very interesting piece .....I'm watching it all again now as reading this and a lot of it makes sense...good find

 

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chli
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The debris (stones) seen here and there could perhaps have been caused by a moonquake, which also disturbed the urns and let out the black goo? The goo then started the evolutionary cycle leading up to the engineers running down the corridors followed by something which also changed skin . . .

 

Also, three of the sarcophagi have holes from chestbursters (or something else). Why didn’t the fourth engineer drive away (for Earth) as was the intention seen in the hologram? If he’d been infected there would have been a fourth hole . . .

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ali81
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good piece. when reading ur theory on an attack I theorised it may have been another faction of the engineers who had come to stop theyr plan but the engineers in the hologram r most definitely afraid, which would lead me to think it was some form of xeno, perhaps multiple xenos but if that's the case, why was the decapitated engineers body left and not eaten? if it was another faction how did the manage to fit in the first place? one theory on that could be the structure the crew have to crouch under was placed there to cover up the facility but again why not just blow it up? the structure they crouch under is clearly on legs of some kind and the engineers probably have another entry point to the facility below

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ali81
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what if the engineers seen running in the hologram r not the ones occupying the facilty but r being experimented on and have managed to free themselves???they r running from theyr more sinister captives. or they r explorers of sorts and have been caught up in events similar to alien and have stumbled across something they wish they hadn't???if it had been a warring faction I don't see them leave the facilty standing and at least one engineer alive and well in stasis

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Mawhill79
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The fact that an engineer was left alive in stasis suggests to me that he was put in stasis before the situation that left the other engineers dead, and that the event that led to their deaths happened just before he was supposed to be sent to Earth. I don't think he was left on purpose. This makes the theory that they were attacked by an alien, possibly a Deacon, add up. If they were killed by killed by other engineers then one would not have been left in stasis, an alien attack makes much more sense to me in explaining why the one engineer was left alive, in stasis. If more light is not shed on this situation in upcoming sequels, I wonder if a prequel will one day explain?! 

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ali81
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yea I agree, I def think ridley will answer this question as its too big a talking point not to readdress. I think the way covenant is being set up it will be far too fast paced to take time out to revisit this situation at the facility but maybe the next one will delve deeper into the engineers and theyr civilization and then in a flashback scene revisit what happened to them. an alien attack is the most logical scenario as it seems everything was left the way it was after the attack but then who piled up the bodies???don't see an alien taking the time out to do that and if anything the chest burster would eat the corpse for nourishment. did another faction who was responsible for the alien attack come back some time later?again they wouldn't leave anyone alive of the facility standing to be used again

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Rick
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Guys n Gals,

Here is something that was completely missed.  The hologram of the engineers running into the head room  and the one at the and tripped and fell then got up and ran just to get his head clipped by the door.  With this said

1. The tripped engineer was infected by the black goo prior to him entering the head room hence his head exploding in containment on the ship. Note he had his engineer mask on prior.  Also note his head was preserved by the room so he didn't get infect by the room or the vases after his head was removed.

2. What happened to the engineers that ran into the head room from the hologram?  I bet there is a secret door in that room.  They never found any other engineer bodies in the head room.

Rick

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Dark Nebula
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I suppose the engineers ran somewhere else (to the hypersleep chambers or to the ships?) or left the big head room when they thought it was safe to go idk.

While reading Lindelof's Paradise draft I came to this

If there was something chasing the engineers,I wonder how did that happen and did the black goo had something to do with it.

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acaki
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Sorry, but don't see resemblance to anything similar to the door or shattered door panels. Also there are three big openings - so you suggest that someone broke door panels on all openings? Why? They would only need one. Although, interesting theory.

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Rick
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DN,

After thinking about the chase.  Maybe nothing was chasing "them".  Maybe they were trying to get away from the last engineer that was infected by the black goo.

Rick

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chli
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I would say that the low height of the entrance to the temple, to outer doors, the debris seen everywhere and the unpolished appearance of the structure is because it is in fact an old ruin. It has been partly buried under several metres of gravel and dust (they have to crouch to get in) and the elements have affected the building for about 2000 years without anyone tending it. Presumably there have also been moonquakes shaking and cracking it.

 

Later on they come to a hole in the ground (similar to the hole which Kane enters on LV-426). Here they find out that they can breathe the air. What is/was down there? Also, we know that the juggernaut is close by with the Jockey-chair . . .

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Dark Nebula
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Thats what I was thinking, one of them got infected by some accident and was trying to kill himself before he would become fully mutated.The rest of the engineers ran away from him because they knew what the black goo they made here was capable of doing,and we've seen it with the mutated Fifield (Imagine the mutated Engineer).

Also notice the black goo ponds and streams all over the corridors.

I suppose the big head room wasn't the only room with the black goo ampules.

 

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Acid Reign 161
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I'm not sure if I am in the minority here (as I tend to join the 'Alien' movie convos more) but I really thought Prometheus told us everything we needed to know/it was explained in the movie? We see the hologram of the Engineers running (looking behind, so obviously being chased) trying to get through the next door before it seals... this suggested (to me) that during the outbreak there was a lockdown and the Engineers were frantically trying to get to their ships to escape (and/or) complete their mission.. (they obviously had no control of the doors on account of the decapitated engineer) we know it wasnt just 'black goo' contamination as we see the bodies of those that didnt make it huddled by doors, with holes in them that the prometheus crew comment that "something came out of them".. so i never once questioned that it was anything other than a deacon/xeno outbreak.. the fact we see a deacon mural and then see a deacon at the end of the movie kinda reinforced that. Other than holding our hands and literally showing us footage of it happening, they couldnt have made it any clearer? :-) as for the goo on the walls.. again (and sorry if this sounds condecending in any way, i dont mean it to come across as such!) but i feel they showed us clearly what it was.. biotechnology..when david handled the substance it emitted the same blue holographic 'fizz' as the recordings.. it is on the walls as much of their technology seems to be hologram based.. the goo emmits the holograms (think of the pilot chamber, no visable controls as such.. holographic touch and sound based technology) ....the one and only question the movie didnt answer (intentionally) was why the engineers seeded life on Earth, then decided to wipe us out (but that was the whole point of Shaw heading off to Paradise for her answers at the end) I honestly dont find Prometheus to be a confusing movie? :-) 

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Rick
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DN,

I don't know if those streams are black goo.  When they entered the corridors from the hole in the floor if you noticed it was raining and there were streams of water running down into the hole which is probably what those streams are down in the tunnel.  Just a theory, I mean all that water has to go somewhere and I didn't see a any water treatment or drain off in the tunnels.  Which leads me to another question.  With all the technologies the engineers had there was no evidence water treatment, power source, mess hall, no real technology other than some wall panels, automatic doors, and the green crystal table in the head room.

Rick

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Dark Nebula
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Idk if it is water or the black goo,there was already a conversation about it between Ford,Milburn and Fifield:

FORD:Its -12 over here.

MILLBURN:Then why isn't water frozen?

FIFIELD: Maybe it ain't water.

MILLBURN: Maybe its martian piss.

FIFIELD:Thats your scientific theory,isn't it Mr.Biologist?

Also if you look closely in the deleted scene (that scene you mentioned) when Millburn spots and grabs little creature from what looks like some kind of a black substance to me.

 

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dk
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If there was a deacon in the area when the crew was in the pramid as suggested, would it not have attacked the Prometheus crew?

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SpaceGhost71
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I know a lot of people focus on the Deacon as a particular species/Alien.  Have you ever considered the Deacon to be one of kind?  Think about this.  Holloway ingests goo, impregnates Shaw with corrupted sperm, Shaw gives birth to the Trilobite, Trilobite hugs an Engineer and boom you have the deacon.  I think there would be differences if the Trilobite hugged a human being or if a standard facehugger joined up with an Engineer. Although similar in design it would still have different characteristics.  Look at the Neomorph.......baby version is similar to a Xeno (sort of, not snake like but same DNA), yet vastly different. Also, the big pile of bodies in the facility with holes in their bio armor tells me the Engineers weren't fighting a standard Xeno.  Considering the strength of the Engineer and the fight he put up with the Trilobite they could have been facing something bigger and nastier than anything we've yet to see.  Just a thought ;)    

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Deep Space
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In reply to various posts above:

Something that struck me when rewatching Prom that relates to this is the fate of the Engineers that were 'busted' whilst in hypersleep.

I can't tell from the film but were their corpses still in the sleep chambers (that you can see are exploded)?

If not, where did they go?  And if so - where is whatever came out of them?  Unless they burst like the head that the Prom crew study on the ship?

 

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Resurgence
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when i was watching the movie i knew i was missing something but i didn't know what, this is what i was missing.

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Resurgence
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the green rock is related i know it! i don't know how but i just know it is!

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chli
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There's the green goo on the panel where David starts the hologram, there is the green stone in front of the mural and there's the green orb raising the cockpit. The green substance might be some kind of power source?

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Resurgence
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nige don't forget the strange laser triangle appearance

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Xenowarrior
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The entrance of the temple you suggest where the part of the door is broken and the Engineer doesn't fit through it, I think that is not right at all. If you look better, the surrounding area of the entrance is burried in. The ground was supposed to be lower. Through the ages, the entrance was almost burried in by earth and rocks, like we also see with the Sphinx in Egypt at the time of discovery, when it was almost burried in with dessert sand. That door normally opened in a curve where the parts slides into each other, easy for a Engineer to enter. Maybe when they remove all the earth and rocks in front of the doorway, maybe that hole is bigger than we see in the movie and that something indeed bust in the temple.

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S.M
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Yeah I always figured with the storms they get on that planet, that the dirt would build up over time.

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BigDave
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Interesting post Chris.... i am sure you intended it to be about something new.. but then it has brought up a lot of old Topics and Debates.. so i will discus these as quick as i can so that the NEW GUYs who may have never seen the old Topics can get my Two Cents..

But first i would like to say... WOW... something i never paid attention to Chris... so its a nice find... i mean i noticed it before some parts at least but never gave it any detailed Analysis.

I am not sure i arrive at the same conclusions though as there is some evidence that seems to show us what happened in the OUTBREAK

But indeed, the Entrance they (Prometheus crew) enter in is not large... not a complete circle too....  yet it seems to have the same kind of look at pattern as many some Doors inside, well when i say doors i mean as far as to contain and shut off areas of the Outpost. Much like the Doors Dallas opens and shuts in the scene where he gets caught by the Alien.

The Concept Art has these doorways too..  and the circular ones and also the arch shaped ones are very Large, even Larger compared to our LV-223 Engineers.

So yes it could look like the place was broken into Chris, its a possibility...  and so maybe we cant rule out that the LV-223 Engineers had invaded and taken over what ever this place was THOUSANDS of years ago.   Then turned this place into their own Research Outpost...

I think this could fit.... so that the LV-223 Engineers overtook this place some many thousands of years ago, but prior it belonged to another Race, or related Race/Faction.

This could fit with the Star Map Invitations, well what Shaw assumed they were..... the oldest being 35'000 years old... why would the Engineers leave a Map to a place from 35'000 years ago.. if no such place had existed then... and i cant buy that they left clues to a place they intended to build.

The Place could Support Human Life....  The Engineers did not need their Space Jockey Suits to survive on LV-223 Surface at least for a certain period of time....  (shots from unused Scenes prove this).

So indeed Chris that theory could be in Part Correct... its nice to have something we overlooked to add to a whole new way to look at the Outpost.....

I would say the Attack did not lead to the Outbreak though, but who knows... if i was to take your New Theory and apply what i look into it as.... then i think having this Place Once belong to another Faction.. that had a different Agenda seems to fit...

Before the Rogue Faction attacked and overran the Place.

This fits into my preferred theory that this place was at once a Green House/Nursery where the Watchers/Gardeners would experiment on various lifeforms and upgrade/evolve them in this place as a testing facility... and when they are happy with the results... they then seed them to Earth and other Worlds.

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BigDave
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Another way of looking at it.. that i was thinking was what if it could be the result of some WMD used on the Place... maybe this World was not as Barron many many years prior?

Its got Nuked... well similar... then the Rogue Engineers went in afterwards...

As the Temple looks like its been covered in sediment, as it appears maybe the Entrance the Prometheus crew took was Larger... i.e the area height before they get to the broken entrance... and as i was touching in in previous post.... this circular entrance looks partially buried.

But as SM stated... it could be a natural build up over Thousands of Years, the Temples did have structures well a Wall around it to protect from Sandstorms... and maybe they would then clean up any that got behind these barriers..

But having died off 2000 years ago, there was no maintenance on this... and so it would be like living in the Antartic in a House with a drive and the owners passed away... with no one to clear the driveway of snow.. over years it would get snowed in...

But how would this explain the interior that looked like more broken Doors?

chli had answered this this..

"The debris (stones) seen here and there could perhaps have been caused by a moonquake, which also disturbe"

Very Possible explanation too... and also the bit that such a event could lead to a Outbreak... we only need to look at Fukishima.

I will cover the reasons for potential Outbreak, reasons for why there was maybe no Deacon? Or maybe there was and the Engineer Bodies.. but i have covered them before..

But i will recap again latter

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Wrenchpede
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In the behind the scenes from that fancy bluray, when they get to Fifield's mutation, someone points out that his head was made to look like it was going to explode similar to that of the Engineer.

This may be why they went in this direction instead of using the more alien-like design: To give a clue that the decapitated Engineer was infected with the black goo.

Still, the Deacond noise can't be ignored.

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BigDave
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Onto the Engineer Bodies... we have to remember these were most likely worked on before the Lindeloff drafts as some production had started.. as far as Propwork...

Spaights draft had showed us a few things..

1) Engineers were trying to run to the Chasm and throw themselves down it (commit Suicide).

2) Its intended that some of the Dead Engineers are Chest Busted and others have wounds caused by a attack from these Chest Busted Aliens.

So the Deacon theory could work... here is some flaws to it though.

1) The Hologram did not pick up what was chasing them, but picked up the Sound the Deacon chasing them made?  Then we have to wander is it a case of the Hologram stopped at this point? or we never saw the area the Deacon was captured.

2) The movie had hints of a Outbreak like Ebola.. referenced by Shaw and then Janeks comments are to lead us to conclude as such... which is where the Head comes in... 

This head explodes when brought back to life, Shaw saw its cells changing... hints at a Black Goo infection.

3) The Body however looked hollow... so did the Engineer Bodies (maybe a oversight)... 

But this brings me to the theory... as i mentioned before, if these Engineers are infected.. and they are in the process of changing to a point like the Sacrificial Engineer, this process was a Violent Reaction...  a Chemical Reaction... Genetic Material being violently broken down..

The Sacrificial Engineer, this reaction was not contained within a pressured suit (container) if you say add a Minto to a Coke Bottle it causes a Violent Reaction due to the build up of CO2 and this Gas build up will force the Liquid out of the Bottle at the weakest point... 

I assume the Engineers suffered similar to the Sacrificial Engineer but the  reaction and broken down material had no where to go due to being contained within the Space Jockey Suits... that eventually it would explode out of the suit.. in random places.

This...

*Fits with the Head infection

*Shaws theory on what is going on

*Clues to how the Goo worked.

*Explain the Hollow Engineer Suits.

*Give reason for why they wanted to get into the Big Head Room.

Because i feel the environment within it could contain and stop the Goo from doing what it does.. which is why the Urns have stayed there for thousands of years.... The Atmosphere was infected by the Crew entering with maybe no Helmets.

The Ampoule/Big Head Room preserved the Head... yet the body on the other side was not preserved... and not even any bones remained.. which means the Engineers Genetic Material was broken down.

Why would the  Engineers run into that Room?   Maybe once a infection starts they had a antidote that must be administered within a short space of time...

Otherwise it makes no sense to run into that room, what are they to do.. remain in the room forever... would it only slow down the inevitable?

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BigDave
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The Chest Busted Cryo-Engineers...

Again could have been a Prop worked on for Spaights draft (indeed it was) that Lindeloff had to add to his story...  and i think it may have been left in as a Clue...

Something had Chest Busted from those Engineers... thats for sure...  under the Cryo-Pods there are prop Engineers with Chest Buster Holes the size of a Deacons...

However the Hole in the Cryo-Pods are smaller.. typical Alien Chest Buster sized...

Spaights draft explains his version of this scene... the Engineer was infected (Xeno type Embryo) he rushed into Cryo-sleep to put a stop to the infection.....

As when he is awoken he was angry at the Human Crew and told them that they had now condemned him to death... (Chest Buster)

This would explain his 3 comrades Chest Busted Bodies... they must not have got into the Cryo-Sleep Pods soon enough...

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